ClermonTyping a website for Escherichia Escherichia determining species phylogroups from contigs or whole genome.

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IAME Inserm Diderot P13 FRM

Getting source code

A standalone version is available on Github.


[1] AB.Nahmias, J.Beghain, H.Le Nagard, E.Denamur, O.Clermont. ClermonTyping: An in silico method for Escherichia albertii, E. fergusonii and E. clade assignation and E. coli sensu stricto phylotyping. Submitted.

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Licensing - GPL v3

The source code is licensed under GNU General Public License, version 3