Cite


[1] Beghain J, Bridier-Nahmias A, Le Nagard H, E.Denamur and O.Clermont. Clermontyping: an easy-to-use and accurate in silico method for Escherichia genus strain phylotyping. Microb Genom. 2018 Jun 19. [PMID: 29916797] [PMCID: PMC6113867] [DOI: 10.1099/mgen.0.000192]

[2] Clermont O, Dixit OVA, Vangchhia B, Condamine B, Dion S, Bridier-Nahmias A, Denamur E, Gordon D. Characterization and rapid identification of phylogroup G in Escherichia coli, a lineage with high virulence and antibiotic resistance potential. Environ Microbiol. 2019 Jun 12. [PMID: 31188527] [DOI: 10.11111/1462-2920.14713]

Update


  • 23.06
    • Add fdm primers for H group with quadruplex -++-
  • 21.03
    • Changing arpAgpE primers to fdm primers for E group
    • Adding a sequence for E Mash group
    • Adding an essential primer for F group
  • 20.03
    • Adding sequences for G Mash group
  • 1.4.0
    • Adding an essential primer for G group
  • 1.3.0
    • Adding an essential primer for E. fergusonii amplification
    • Changing behavior for other E. fergusonii to Unkown
  • 1.2.0
    • Changing conclusion about trpA missing
    • Changing behavior for other E. fergusonii to Unkown
  • 1.1.0
    • Adding disambiguation in profile +-+- with clade I
  • 1.0.0
    • First release

Licensing - GPL v3


The source code is licensed under GNU General Public License, version 3

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